Overview
BioShell supports nationally delivered training events and research projects across Australia. This page highlights workshops delivered using BioShell and how you can get involved.
Training
The following training has been delivered using BioShell as the computational environment. All training run by Australian BioCommons are openly available via Zenodo.
Unlocking nf-core: customising workflows for your research
Samaha G, Willet C, Hakkaart C, Beecroft S, Stott A, Ip A, Cooke S (2023)
RNASeq: reads to differential genes and pathways
Samaha G, Deshpande N, Lu C-Y, Chung J, Stott A, Ip A (2023)
Genetic Outlier Analysis
Stuart K, Samaha G, Barugahare A, Miller S, Deshpande N, Lu C-Y (2024)
Nextflow for the life sciences
Jaya F, Geaghan M, Xue W, Antczak M, Gauthier M-E, Beecroft S, O'Brien M, et al (2025)
Spatial omics
Jaya F, Williams S, O'Brien MJ, Matigian N, Thind AS, Wang C, Mori G (2025)
Introduction to the Linux Command Line Workshop
Allan J, Merce C, Kadolsky U, Zhang A (2026)
Unlocking nf-core: customising workflows for your research
Willet C, Geaghan M, Gagalova K, Antczak M, Samaha G, O'Brien M (2026)
Intro to Nextflow (rerun)
Lupat R and Li S (2026)
Spatial omics sampler
Williams S (2026)
Research outcomes
BioShell has supported research projects across a range of molecular life sciences disciplines. This section highlights projects that have used BioShell as part of their research.